The second Teenage Mutant Ninja Turtles game for NES is based off the first one for the arcade, try to not think about that too much.
But, since it's based on an arcade game, it's kind of tough, and there are button codes for level select and for bonus lives to help you out. But why bother with choosing one over the other when you can have both?
First, go to the title screen
Then (kind of quickly) enter the following code:
B, A, B, A, Up, Down, B, A, Left, Right, B, A, Start
You won't get a confirmation 'ding' or anything, but hit Start and choose your Turtle
If you put the code in right, you'll then be able to choose your starting stage
And when you start playing your chosen stage, you'll have 9 lives to play with
It's totally win-win!